Additional Links for Genomics
Categories
• Software for DNA Analysis
• Quantitative and Real-time PCR
• Technical Information, Apps, and Training
Software for DNA Analysis
Client Workstation PC – Remote access to genomics software
NCBI – National Center for Biotechnology Information
BioEdit
– full-featured program, including alignments
Chromas LITE – review ABI sequence files
Codehop – excellent for degenerate primer design
DNA Duster – strips non-DNA characters
IDT’s Suite of Online SciTools
MultiPipMaker – alignment tool for <2 Mb per sequence
Primer3 – primer design
RepeatMasker – masking tool for repetitive elements in DNA sequences
QuantStudio-6 qPCR, v1.3
– freeware (PC), analyze *.eds files — Warning: v1.7 is
not compatible with our qPCR platforms.
Sequence Scanner v2.0 by ABI – freeware (PC), analyze your ABI sequence data, access raw data (including signal intensity), generate reports to trouble-shoot sequencing problems, and more!
Connect – Free Cloud applications by ThermoFisher for analyzing genetic data.
Real-Time PCR and Digital PCR Support Centers - freeware and other support.
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Quantitative and Real-time PCR
Optical Adhesive Sealing Technique: Although the voice-over states between each well and along outside edges, note the demonstrator does
not
go "between each well" (which can disrupt well seals).
Protein Thermal Shift (PTS) (online user guide)
Real-time PCR Handbook 2.0 (2024; periodically updated) Real-Time PCR (qPCR) Learning Center (ThermoFisher)
Real-Time PCR Troubleshooting Tool (ThermoFisher)
How to design a solid qPCR study (vendor pdf, 2011)
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Technical Information, Apps, and Training
Promega Calculators, Tools, & Technical Resources
ThermoFisher Instrument & Applications Training
ThermoFisher Lab Apps (tools)
New England Biolabs – tutorials, tech. information, and links
Vector Data (Promega)
Eppendorf webinars: such as...
– Good Plastics, Bad Plastics... How Tubes, Plates and Pipette Tips Can Affect
Your Experiments.
– Photometry Made Easy! ... Obtaining Reliable Results with Nucleic Acid Measurements.
– Preventing Contamination in Cell Culture Labs. ↵ Back to Top
